Bioinformatics Tools
(1)Genome Browsers
A powerful visualization platform for vertebrate and model organism genomes.
2.Ensembl
A genome annotation database and browser with comparative genomics features.
Genome visualization tool from NCBI supporting multiple species and datasets.
(2)BLAST Tools
Performs sequence similarity searches using BLAST against the NCBI database.
Runs BLAST on EMBL-EBI servers with customizable parameters and formats.
BLAST tool on the KEGG database, focusing on metabolic and pathway-related genes.
(3)Whole Genome Prediction Tools
1.DNNGP
A deep neural network-based genomic prediction tool implemented in Python.
A fast, distributed, high-performance gradient boosting framework based on decision tree algorithms.
3.SVR (Support Vector Regression)
A kernel-based machine learning method used for regression tasks.
An optimized distributed gradient boosting library designed to be highly efficient, flexible, and portable.
5.Bayes (e.g., BayesB / BayesianRidge)
A Bayesian regression model that incorporates prior distributions on marker effects.
6.GBLUP (Genomic Best Linear Unbiased Prediction)
A linear mixed model using the genomic relationship matrix for breeding value prediction.
