Tools
1.LGB
A fast, high-performance gradient boosting framework for regression and classification.
https://lightgbm.readthedocs.io/
2.SVR
Support Vector Regression for predicting continuous traits based on genomic data.
https://scikit-learn.org/stable/modules/svm.html#svr
3.DNNGP
Deep Neural Network-based Genomic Prediction tool for plant breeding.
https://github.com/yourrepo/DNNGP
4.GBLUP
Genomic Best Linear Unbiased Prediction method for estimating genetic values.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2954906/
5.Bayes
Bayesian models for genomic selection and trait prediction.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2939984/
6.XGBoost
Scalable tree boosting system for high-performance machine learning.
https://xgboost.readthedocs.io/
7.JBrowse
Modern genome browser for interactive visualization of genomic data.
https://jbrowse.org/
8.BLAST
Basic Local Alignment Search Tool for comparing nucleotide or protein sequences.
https://blast.ncbi.nlm.nih.gov/Blast.cgi
Database Navigation
1.PlantGIR
Plant Genome Information Resource, providing genomic datasets and tools.
2.TVIR2
Taro Variety Information Resource for germplasm and genomic data.
3.NCBI
National Center for Biotechnology Information, a central resource for molecular biology information.
https://www.ncbi.nlm.nih.gov/
4.GDR
Genome Database for Rosaceae, a comprehensive resource for Rosaceae genomic data.
https://www.rosaceae.org/